Introduction | Installation | Official release | Development version | Detailed example workflow: Data loading and preparation | Load packages to work with this vignette, including forceR | Download raw measurement files | Plot raw measurement | Crop raw measurement | Amplifier drift correction | Automatic or manual baseline correction of time series | File sorting | File loading | Detailed example workflow: Data analysis | Sampling Frequency Reduction | Creating a classifier with dataset info | Convert measurement to force | Minimum, maximum and standard deviation of force data per measurement and species | Initial reduction to one row per specimen | Further summary calculations for species-wise info | Identify bites | Manual peak corrections | Normalize (rescale) peaks | Reduce to 100 time steps per peak | Average peak curve per species | Fit polynomial functions to the force curves | Convert curves to polynomial models | Well done! | forceR workflow example
Package: forceR 1.0.21
Peter T. Rühr
forceR: Force Measurement Analyses
For cleaning and analysis of graphs, such as animal closing force measurements. 'forceR' was initially written and optimized to deal with insect bite force measurements, but can be used for any time series. Includes a full workflow to load, plot and crop data, correct amplifier and baseline drifts, identify individual peak shapes (bites), rescale (normalize) peak curves, and find best polynomial fits to describe and analyze force curve shapes.
Authors:
forceR_1.0.21.tar.gz
forceR_1.0.21.zip(r-4.7)forceR_1.0.21.zip(r-4.6)forceR_1.0.21.zip(r-4.5)
forceR_1.0.21.tgz(r-4.6-any)forceR_1.0.21.tgz(r-4.5-any)
forceR_1.0.21.tar.gz(r-4.7-any)forceR_1.0.21.tar.gz(r-4.6-any)
forceR_1.0.21.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
forceR/json (API)
| # Install 'forceR' in R: |
| install.packages('forceR', repos = c('https://pete-s-lab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/peter-t-ruehr/forcer/issues
Datasets:
- classifier - Classifier
- df.all - Simulated Force Measurements with Taxonomic Info.
- df.all.200 - Simulated Time Series - e.g. Bite Force Measurements
- df.all.200.tax - Simulated Force Measurements with Taxonomic Info.
- models - Polynomial Models Describing Average Peak Shapes.
- peaks.df - Starts and Ends of the 5 Strongest Peaks
- peaks.df.100.avg - Average Peak Shapes per Species
- peaks.df.norm - Normalized Peak Shapes
- peaks.df.norm.100 - Normalized Peak Shapes with 100 Observations
Last updated from:36ca1c7c0e. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 155 | ||
| source / vignettes | OK | 227 | ||
| linux-release-x86_64 | OK | 146 | ||
| macos-release-arm64 | OK | 156 | ||
| macos-oldrel-arm64 | OK | 248 | ||
| windows-devel | OK | 206 | ||
| windows-release | OK | 109 | ||
| windows-oldrel | OK | 92 | ||
| wasm-release | OK | 115 |
Exports:amp_drift_corravg_peaksbaseline_corrconvert_measurementcorrect_peakcrop_measurementfind_best_fitsfind_strongest_peaksforceR_exampleload_multload_singlepeak_duration_max_forcepeak_to_polyplot_measurementplot_peaksprint_progressred_peaks_100reduce_frqrescale_peaksrescale_to_rangesimulate_bitessort_filessummarize_measurementstodayy_to_force
Dependencies:backportsbitbit64checkmateclicliprcpp11crayondplyrfilesstringsgenericsgluehmslifecyclemagrittrpillarpkgconfigprettyunitsprogresspurrrR6RcppRcppArmadilloRcppParallelreadrrlangrollstrexstringistringrtibbletidyselecttzdbutf8vctrsvroomwithr
